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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … The work is of interest to the Department of Energy (DOE) Office of Science’s Biological and Environmental Research … under Contract No. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… food webs in cold, but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and … led by UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … multiple sources, including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Pinning Down a Piece of Photosynthesis
… is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are … feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, … , using long-read sequencing to assemble the repetitive areas of the complete sex chromosomes. The results were …
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Mapping Heat Resistance in Yeasts
… for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers … diversity in traits relevant to U.S. Department of Energy (DOE) missions in energy and environment. Summary There are … of Lawrence Berkeley National Laboratory, aim to improve our understanding of fungal diversity by sequencing genomes …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI is … year we look for novel research projects — aligned with DOE missions and from PIs who have not led any … —  through the  New Investigator call under our Community Science Program.  Below find a list of the first 10 …
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Defining a Pan-Genome for Antarctic Archaea
… broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are … Antarctica distinct and unique. In collaboration with the DOE Joint Genome Institute, a DOE Office of Science User … Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… a keynote speaker addressed the conference, sharing the journeys of their research careers, and showcasing the broad … of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced Bruce … in the earth’s soils. While she admits that it “0.25% doesn’t seem like a lot (referring to the abundance of …
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The JGI Data Portal: Improving User Experience
… around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases … , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and computational needs. Over its … more findable and easier to download is a complex one, so our joint team started small, in the tradition of agile …
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