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How to Target a Microbial Needle within a Community Haystack
… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … , combines multiple techniques and was demonstrated using a specific group of marine bacteria called “Vis6” that …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards graduate … SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of … with computational biologist Dylan Chivian and other KBase team members at Lawrence Berkeley National Lab. …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The … published in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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A Sorghum Pangenome Opens More Doors to Discovery
… for breeders and researchers to harness the traits that let this biomass powerhouse thrive. Within its genome, … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … Sequencing Center. Surfacing new knowledge with a pangenome Using this pangenome resource, this team demonstrated ways …
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Georg Rath
… Mr. Rath has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working … of the Cluster Advisory Group (CAG), he sees his role as using the substrate provided by LBNL, where possible, and …
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A Social Science Experience
… 2017 Summer Interns Share Highlights of their time at the JGI …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial … conducted by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in … The meeting was a hybrid event, with guests joining onsite at the Integrative Genomics Building at Lawrence Berkeley … then pivoted towards the future and shared ways that her team is looking to use CRISPR-Cas9 to solve new problems. …
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