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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… Trubl, a virologist and postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of … Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … Sequencing and assembly data carried out by EMBRAPA as part of the  Corymbia  genome project was supported by FAPDF …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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Cracking the Secrets of the Diatom’s Shell
… Diatoms, a group of tiny algae, are also known as “living opals” because of the … properties of their silica shells. But what genes are responsible for such mesmerizing exteriors? Setsuko Wakao and …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how … is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the …
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Richard Fox
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … data set will help identify how different elements of the ecosystem interact and respond to changes in the … This research was sponsored by the U.S. Department of Energy, Office of Science, Biological and Environmental …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … lineages in the NCLDV group infect mainly protists and algae, and some of them have genomes in the megabase range. …
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Learning to Look
… expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … membrane without lysing the bacterial host. They can also influence their host’s growth and pathogenicity, in turn …
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