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Exploring Possibilities: 2022 JGI-UC Merced Interns
… I find this really valuable because in this time that I’ve been in my PhD program, I’ve been really focused with academia. And so this was the first … take with me to the future.  Shari Larsen : I didn’t grow up with computers, and it seems like my younger counterparts …
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Effects of Polar Light Cycle on Microbial Food Web
… the polar regions to the deep ocean, cold environments occupy more space on Earth than any other ecosystem. Therefore, … from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many researchers for nearly five … decades. In these frigid systems, where organisms higher up in the food web like fish do not exist, nutrient cycling …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of sorghum plants are … evaporation in the leaves. Each week the team would set up a makeshift lab powered by a generator at the KARE field … of California, Berkeley [N.V.]); L’Ecole Normale Superieure-CFM Data Science Chair (E.P.); and the Office of …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… this work.  North led the team that did this work. His group from the Ohio State University joined Hannah Shafaat’s … the MAR enzyme .  Lately, North and his team set themselves up to move from that gene identification into mechanistic … on sequences for MAR enzymes from different organisms to support this system.  Based on the nitrogenase-like nature of …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… genetic sequences (already known as CRISPR) that came up in her team’s metagenomic  samples . While Banfield … activity on Earth,” Weizmann explained.   These algae take up carbon dioxide and emit oxygen and other gasses — some of … a great impact on these algal blooms. So Vardi and his group study one specific alga,  Emiliania huxleyi  (sequenced …
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Fungus Fuels Tree Growth
… to its intimate associations with endophytes — a group whose effects on plants are still not well understood — … This work was supported by the Plant-Microbe Interfaces program at the Oak … Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the United States …
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2022 Progress Report
… most advanced integrative genome science capabilities in support of the DOE’s research mission.     Director's …
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JGI-UC Merced Interns Share Their 2021 Experiences
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same … and 200 genes (or 209 sigma factor-target gene pairs) had been experimentally verified in S. coelicolor . With results …
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Charting Progress toward Professional Goals
… participated in the SEED Scholars @ LBNL program,  with support from  the SEED program at UC Berkeley. Sally Liao … session actually, like just a couple days from now. So I've been thinking about science communication, like prepping for … like, “why are you explaining phylogeny to people who have been working here for like decades?” So, just important to …
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Nikos Kyrpides
… with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling large-scale … compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach S, et …
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When “The Blob” Made It Hotter Under the Water
… water samples when The Blob started. The samples were taken up and down the water column along the Line P transect, a … modeled the impact of The Blob on the microbial communities up and down the water column. They recently shared their … Genome Institute, an Office of Science User Facility, supported by the Office of Science of the U.S. Department of …
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