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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data …
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10 From JGI on the 2019 Highly Cited Researchers List
… , Biology & Biochemistry category Some highlights from projects each of these researchers were involved in that … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … the minimum amount of information for an uncultivated virus genome, including the source, methods of identification of …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at … work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office … developed with funding from the Defense Advanced Research Projects Agency (DARPA) as part of the Bio-inspired …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … effort was to decode the complex Phytophthora ramorum genome. The JGI generated the organism’s DNA code in tandem … of tens of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), …
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Yasuo Yoshikuni
… and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also … production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … has long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  now available to … many terabases of sequences from large metagenome projects — ultimately assembling over 220 Tb of sequences …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … very first project — the revolutionary work of the human genome project, which spanned nearly two decades, was filled … and a hardworking team. He highlighted several important projects the JGI has worked on, from the myriad of omics …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … also carries out custom preparative work for difficult user projects, including those that require fluorescence … PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide selective sweeps and gene-specific sweeps in …
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Ancient Algae Reveal Secrets of Plant Evolution
… Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … in improving plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm …
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