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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been … expression in the organism Clostridium autoethanogenum. The microbe can utilize carbon oxides, including the greenhouse …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … of course, the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of … at the JGI led a team that combed datasets from around the world, finding over 125,000 partial and complete viral …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the …
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Igor Grigoriev
… at the JGI, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata … Collaborative ( NMDC ) and the DOE Systems Biology Knowledgebase ( KBase ) — and aims to extend these collaborations …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis … takes a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, … award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a … small plastic growth chambers let researchers around the world compare their work consistently. And EcoFABs also work …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … nitrogen-metabolizing enzymes are abundant, and to which microbes they belong. This study provides further insights … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab … Brandon Imstepf一were selected to continue their research projects through the DOE RENEW grant initiative when school …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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Metabolomics Technology Group
… the distributed and dynamic metabolite networks of environmental microbes and how they transform their environment. Research Team    …
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