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JGI Earth Month: Wetlands Work in #TenHundredWords
… microbiome composition and metabolism, work on which she is expanding with her study of microbes in California’s manmade water transport canals. Inspired by Randall Munroe’s xkcd comic “Up Goer Five” and his … abstract from a 2019 conference. Both versions appear side-by-side below: Kaze was part of the  2018 cohort of the …
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Igor Grigoriev
… Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson … et al (2017) A parts list for fungal cellulosomes revealed by comparative genomics.  Nature Microbio 2:17087. Mondo et … (2016) Comparative genomics of biotechnologically important yeasts.  Proc Natl Acad Sci U S A. 113(35):9882-7. Kohler et …
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Natural Prodcast Episode 1: The Primer, Part 1
… as a much longer conversation, which I cut into more digestable pieces. If you’re an expert in the field, you can … search away! If you like these primer episodes, let me know by emailing us to [email protected], or on twitter @JGI or … been in – working in secondary metabolism for almost 20 years now. Which when I did the math, that was a surprise to …
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Webinar: MycoCosm Tutorial
… Q: Is there any possibility to search for genes/proteins by their commonly used names in publications? e.g. erg-1 … they are searchable. For model fungi, not sequenced by JGI and adopted by large research community we  are … annotation across the fungal kingdom. Some genomes, like yeasts, have a lot of well characterized genes. Other …
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Understanding Wildfire Recovery, Starting in Soil
… at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for … The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for User … Office of Science User Facility. This facility is sponsored by the Office of Biological and Environmental Research and …
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JGI Early Career Researchers Featured in mSystems Special Issue
… the authors who offer perspectives on what the next five years of innovation could look like. In one article, … in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating DNA … global ecological and environmental processes, especially by modifying host cell metabolism and altering cell fitness. …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and … often fail to express their BGC molecules in the lab. By engineering domesticated close relatives with the BGCs, … These experiments aim to inform the engineering of stable, synthetic microbial communities to take advantage of …
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Complete genome sequence of Halomicrobium mukohataei type strain (arg-2T)
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Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… working virtually with her JGI mentors for nearly three years after her internship. “That level of commitment and … internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, … year of PhD research at UC Merced. She plans to continue expanding her understanding of mathematics and …
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Mapping the Earth’s Hidden Fungal Kingdom
… lay a future-ready foundation     Over the past billion years, fungi have spread quietly throughout our planet. From … fungi within Dikarya, which include familiar mushrooms and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the …
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JGI at the AGU Fall Meeting
… through a single research proposal: Maximize Your Research by Harnessing Multiple Scientific User Facilities in One … University of Arizona (lightning talk): “Subsurface stable isotope approaches for resolving nitrogen …
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