Search

Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite …

… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are … from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to …

Metagenomic datasets could help map out microbial diversity hotspots … isolates, metagenome-assembled genomes (MAGs) with varying quality scores representing potential genomes, and nearly … 9.73% of the total estimated diversity of the available datasets. Efforts to recover MAGs by extracting data …

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics … Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s …

… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … out the onerous SIP sample processing. Generating these datasets opens up the possibility of new insights across … efforts like these will help grow and improve high-quality datasets, enabling global insights from modeling, …

… discovery and analysis, with a particular fondness for RNA viruses – though he'll take a look at anything related to … he can be found trying to convince others that RNA viruses are actually interesting and not just "spicy … in the mess of genetic sequences lurks the next cool virus – if only our code would stop crashing... …

… reconstructed more than 2,000 genomes of large and giant viruses belonging to the nucleocytoplasmic large DNA viruses (NCLDV) supergroup. As a result, the giant virus protein space grew from 123,000 to over 900,000 …

S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral … . 8674:00585-7. Nayfach S et al. 2021. CheckV assesses the quality and completeness of metagenome-assembled viral …