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… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …

… Lead position in 2009 and assumed the Deputy Director of User Program position in 2021. In addition to her JGI … Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed … the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's areas …

… genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the … Fungal Dataset … Plant Datasets …

… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research achievements that support open data practices, development of standards and processes for …

… Trained on environmental data, a new JGI tool more accurately facilitates microbial … mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly … — and primed for integration with artificial intelligence tools.  LLMs aren’t just for understanding the human …

… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …

… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a …

… include the development of novel computational tools to identify virus sequences, the design of new … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …