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Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … DAN: Well, it is and it isn’t. It depends on different systems of secondary metabolism and the things that are in … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, …

… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … Berkeley National Laboratory (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out …

Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition … . … Morel Mushrooms on MycoCosm Data Portal …

Harnessing BER-funded data resources, researchers built an interactive and … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an …

Sphagnome data would enable researchers’ insights on their potential … Environments) project, assessing how northern peatland ecosystems respond to increases in temperature and elevated … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …

Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … as Fungal and Algal Program Head at the DOE Joint Genome Institute, a Senior Scientist at Lawrence Berkeley … resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal genomics and …

… but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …

… software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …

… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …