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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … to learning about how to navigate and analyze large genomic datasets during the internship, Wint also began … a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help familiarize incoming …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , researchers used population genomics to find that while archaeal hitchhikers may often …
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Defining a Pan-Genome for Antarctic Archaea
… haloarchaea from different Antarctic lakes. To assess the genomic variation in haloarchaea, they also characterized … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme … has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his team compared two strains of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Ancient Algae Reveal Secrets of Plant Evolution
… of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … helped plants thrive under challenging conditions could inform the development of resilient crop varieties able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass …
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Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
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A Grass Model to Help Improve Giant Miscanthus
… perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … The reference genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit … by the Energy Biosciences Institute and the DOE Center for Advanced Bioenergy and Bioproducts Innovation, which is …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … close to our JGI hearts, we’re featuring some scintillating genomic science research that feels especially relevant to …
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Tracing the Evolution of Shiitake Mushrooms
… besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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Improving the Cacao Genome and Phytozome
… infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … more productive cacao plants and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  … assembled by the plant team at the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. …
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