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… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it …

… gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of … well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … of plant-based biofuels and bioproducts. ( Learn more about OGG in  this episode of to the JGI podcast Genome …

… challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … to a pathogen. This ‘“alien’” organism — one previously unseen — is, in fact, a microscopic water mold, … scores of nurseries across the nation, elevating concerns about the pathogen to an all-time high. California …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate … regulating global nutrient cycles. The information gained from understanding the interactions between microbes, hosts, …

… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing … genome science capabilities to support BER's mission of achieving a predictive understanding of complex … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …

… Click the cards below to view a downloadable pdf of accepted proposals from previous fiscal years for our Community Science Program (CSP) as …

… Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … Biology .  Watch this webinar hosted by EMSL to learn more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: Q(uestion): Can I apply as a postdoc, or …

… The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a … (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has … and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon …

… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has …

… Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is … elements or transposons that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may …

… ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and cultivated microbes, … researchers have been able to gain further insights about how microbes have adapted to thrive in polar … This work was supported by the Australian Research Council (DP150100244) and the Australian …