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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-UC Merced Interns Share Their 2021 Experiences
… working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and … PhD research. And for the first time in this program’s history, two interns returned to re-engage with their … foster a diverse future workforce in science. To learn more about each intern’s experience during their internship, …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … support of our goals,” said Mouncey. “Creating transparency about our efforts is critical for enabling complementary and …
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FICUS-NERSC/KBASE
Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase …
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Massie S. Ballon
S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary … the Biosciences Area representatives to Berkeley Lab’s Inclusion, Diversity, Equity & Accountability (IDEA) Chairs … Member, Capitol Science Communicators … Education … About the JGI Manager of Communications & Outreach … Awards …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  … from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are …
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Tracking the Origins of Methane-Producing Microbes
… the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … us with genetic evidence to tie together the evolutionary history of the different types of methanogenesis occurring …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … also the ability to understand the complicated evolutionary history of strawberry in such detail is biologically … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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Tomas Tyml
Tomas uses traditional cultivation methods along with microscopy … of the roles these associations play in the evolutionary history of life. …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech …
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