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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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IMG/VR
… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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The Mobilome in the Mire
… have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, that can move …
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JGI Advisory Committees Code of Conduct
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New Research Sheds Light on Diversity in the Deep Sea
… survive in very hot, high-pressure and chemically-rich ecosystems. This means they hold clues for understanding how … regions to better understand how these hydrothermal ecosystems function in such extreme conditions. They identified … datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published …
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Doubling Down on Known Protein Families
… through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … has been no real analysis of protein families from metagenomes per se.”  Recently, other research teams have … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …
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Tina Clarke
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… majority of the ground cover in peatlands. These boggy ecosystems are acidic and have very little oxygen, which is … gas emissions as well as the need to protect these vital ecosystems. Peat bogs have two distinct zones: Hummocks and … HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …
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How to Target a Microbial Needle within a Community Haystack
… at the Max Planck Institute (MPI) for Marine Microbiology has developed, tested and deployed a pipeline to … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … the HCR-FISH+FACS targeted pipeline on North Sea metagenomes as a proof of principle, the team used a …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … No. DE-AC02-05CH11231. JRS is supported by the NASA Astrobiology Institute Rock Powered Life grant. RS is supported …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on … that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me and learning …
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