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Fishing for Novel Cellulose Degraders
… single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team first …
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Benjamin Cole
… interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational … community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The Science Cyclic … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … after the JGI united the genomics expertise of three national labs in one long building at Walnut Creek, after …
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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … and Verstraetearchaeota lineages. The archaeal genome was detected in samples collected by Stephen Quake’s …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … oil plume from Deepwater Horizon oil spill led to a draft genome of the first deep-sea, oil-eating bacterium from a …
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The Power of One, Amplified
… metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new group at the … Plant Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many … now IGB-wide ZERO Waste Initiative began its most ambitious project yet: a special recycling program to recycle lab …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing … libraries from minimal DNA input without amplification. …
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JGIota: Looking Back at Sequencing for Soybeans
… fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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