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Polar Phytoplankton Need Zinc to Cope with the Cold
… extremely important for polar phytoplankton.  After peering into the function and activity of phytoplankton genes and … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the green alga Microglena sp. YARC, which also contains expanded genes for proteins requiring zinc. Co-expression …
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iPHoP: A Matchmaker for Phages and their Hosts
… iPHoP program brings several of these approaches together into the same workflow, then uses a machine-learning model … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to … rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.     …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and refined our methodology,” Neri … not appear to be evenly distributed around the world. One expanded group is of viruses associated with bacteria; until …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 … Publications …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … Camelina sativa ,  Thlaspi arvense (pennycress),  Crambe hispanica ,  Brassica oleracea , and  Streptanthus barbigeri (bearded jewelflower). Part of efforts to develop pangenomes for these species, this approach would also allow …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … resolution. We are excited to start our collaboration to expand these operando spectroscopic methods in conjunction with microfluidics into a powerful tool to address many of the research …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools … Like others, our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI use to … A: As long as we can harvest the sample, then we can put it into the laser system 7. Q: Can radioactive isotopes be used …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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JGI Announces 2023 Community Science Program Awardees
… Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and …
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Viruses Reprogram Cells into Different Virocells
… about virus-infected microbial cells that are transformed into virocells, and how the outcomes of these infections can … they focused on how virus-infected microbes are transformed into virocells that are metabolically and functionally … between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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