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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome … University of Minnesota to establish the Natural Products Genomics Resource Center. To help enable the discovery of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … of polyploidy.” Evaluating Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … with interests in understanding which processes change biodiversity, and how these changes affect the dynamics and … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … , researchers led by Hal Alper at The University of Texas at Austin and Michael Jewett of Northwestern … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar …
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Boosting Small Molecule Production in Super “Soup”
… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … an alternative format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns … mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  … the last 40,000 years. The Impact Eelgrass represents one of the largest carbon sinks in the ocean — occupying just …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to the development of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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