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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant … Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … RNA Polymerase (RdRP), necessary for replicating the RNA genome replication, detecting it has been a challenge. …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … The team sequenced and assembled a 473-million basepair genome of the common bean, identifying genes related to …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth … I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were …
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Accelerating Metagenomics Discoveries with Deep Learning
Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … to vectorize protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and …
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