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JGI@25: Cow Rumen and the Early Days of Metagenomics
… vital to facilitate the assembly of small DNA fragments into larger and coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … majors at CSU-San Marcos. That course has since expanded into three other universities. You can learn more …
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2025 Progress Report
… Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …
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Tanja Woyke Elected to American Academy of Microbiology
… genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One … in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied … over 900,000 proteins, and virus diversity in this group expanded 10-fold, offering the opportunity to refine the …
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Introducing New Members of the JGI User Executive Committee
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … identified were found within the archaeal superphylum DPANN, named by a JGI-led team for the first five groups …
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New Research Sheds Light on Diversity in the Deep Sea
… hydrothermal fluid. Eventually, that fluid is expelled back into the ocean through vents at temperatures that can exceed … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … contributed metagenomic sequencing to the study as well as  genome analysis, providing authors a more complete picture …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in particular: a cytokinin response regulator that was expanded in a palindrome and shown to be undergoing gene …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Honey Bee Gut Microbiota Divvy Up Dinner
… including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome Institute.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … research cruises, they dipped their self-closing containers into sea water to sample algal communities along transects … change The team used a model from the Intergovernmental Panel on Climate Change (IPCC) 5th Assessment Report to …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … call . It is the first project to have successfully evolved into a full-scale proposal known as the Brassicales Genome Initiative. Brassicales is represented by more than …
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