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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … In order to do so, these organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … can show which species actively munch on a specific chemical compound. By feeding a microbial community a modified … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Mentor’s Perspective on Training the Next Generation
… JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how …
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Dispatches From JGI Interns
… and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns … cohort describe their deep dives into genomics, computational tools, and big data.  …
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Webinar: Introducing the BioSANS capability
… for Structural Molecular Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences … to showcase how researchers can gain access to the Biological Small-Angle Neutron Scattering (BioSANS) instrument when … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational … community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … promote and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … algae and protists, all kinds of viruses impact many ecological processes, including carbon cycles. “Whether or not you … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers … software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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The Mobilome in the Mire
… have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, that can move … bringing this mobilome into light, and opening up new options for engineering these microbes in the future. Join Sarah Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time …
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Crysten Blaby-Haas
… a partnership between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley … user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & … for the summer term (May through August) and selected projects will receive stipend and travel expenses, both for … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for the …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic … food webs are microscopic photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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