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Taking Stock of the Known and Unknown Microbial Space
… over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually captured,” said … research areas including agriculture, biofuels and bioproducts, and medicine. Wading through 30 years of sequencing … of Wu, Seshadri, Nikos Kyrpides and Natalia Ivanova conducted a census of publicly available bacterial and archaeal …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… to living on a changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado … being affected by the metals? When metals are introduced, how do they adapt by changing what macromolecules are … thinks it could very well help us as the world becomes a much more crowded place. ED: I mean I really think we’re at a …
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Enlarging Windows into Understanding Gene Functions
… features and functions. Making connections between the structures and functions of the genes encoded in the genome … the initial development of a streamlined workflow that reduces the time and cost associated with this purification … from either genomic DNA or complementary DNA (cDNA), reducing the amount of time it takes to produce a dataset from …
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When “The Blob” Made It Hotter Under the Water
… rise, so do instances of extreme weather events such as hurricanes and droughts. Another one began in late … was already collecting ocean water samples when The Blob started. The samples were taken up and down the water column … global carbon cycle. Tracking large-scale marine events such as The Blob is difficult, but critical. By 2016, the …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… to living on a changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary … prevents CO2 from coming into the leaf and it basically starves the plants.  ALISON:  That’s what might happen for a … genetic features make CAM possible. So, she’s studying yuccas, a group of plants in the Agave family with fleshy, …
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Streamlining Regulon Identification in Bacteria
… in Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist …
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JGI Announces 2025 New Investigator Portfolio
… of projects, including the genomic dynamics of biofuel-producing fungi, the effects of biochar on rhizosphere … pathways of algae. They will harness JGI capabilities such as metatranscriptomics and environmental DNA sequencing …
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Evolution of a Fungal Gene Expression Regulator
… or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases themselves can also … to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, researchers have … with Cole and Serrano to collect and analyze the single nuclei and spatial transcriptomics data this work leverages. … cells and fungal cells. Using a technique called single nuclei RNA sequencing, the researchers identified different …
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JGI Announces 2026 New Investigator Portfolio
… these researchers will harness capabilities including metagenomics, metatranscriptomics and genome assembly to … minerals recovery, microbial pathways for high-value bioproducts, and plant–microbe interactions that enhance crop …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… , researchers describe a strategy to recover high value products from human waste. They   genetically modified yeast to … (Berkeley Lab.) The Impact Biomaterials are materials produced by living organisms. The collaboration between the JGI … the fundamental science to support innovations for bioproduction and advance their utility across the bioeconomy. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… everywhere, comparatively little is known about viruses, much less those considered large and giant. In a recent … diversity of large and giant viruses that belong to the nucleocytoplasmic large DNA viruses (NCLDV) supergroup. The … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …
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