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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Boosting Small Molecule Production in Super “Soup”
… (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are invaluable pollinators — cupids of the plant world facilitating … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and development in actinomycetes. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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