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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full … (University of Missouri), Peter van Esse (The Sainsbury Laboratory) and Sebastien Duplessis (INRAE). …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, … with representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … other lead scientists had embarked on the study — a collaboration of eight institutions led by UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and mentors Igor Grigoriev and Bishoy Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … the world’s soil carbon. The process to harvest energy-generating peat from these boggy wetlands produces an estimated … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She … novel flow cytometry protocols for targeted recovery of specific microbes. …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Hoppy Hour @ Calicraft Brewing, Walnut Creek Where:  Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek … Road company) Hosted by Nigel Mouncey, Director, DOE Joint Genome Institute Read a synthesis from the panel discussion  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Virus Discoveries that Keep Getting Bigger
… from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … This work was conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … can carry out. The work on single cells was done in collaboration with scientists Tanja Woyke and Rex Malmstrom at the …
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Training the Next Generation of Talent
… DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user … faculty are active DOE JGI Community Science Program collaborators, and UC Merced has many talented graduate students …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology …
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