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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, … Research (BER) and is a contribution of the Scientific Focus Area “Phenotypic response of the soil microbiome to …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as … the basis of their behavior in the environment. Large metagenomic surveys could lead to better predictive models of …
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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds …
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Crysten Blaby-Haas
… Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. She is spearheading the development of a joint user capability between the JGI and Molecular Foundry for … working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging …
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Tanja Woyke Elected to American Academy of Microbiology
… Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells … Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell methods to … to decode genomes of bacteria and archaea from previously understudied clades, establishing their evolutionary …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome … and facilitates accurate and insightful comparative genomics studies. …
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MGM Workshop at Fisabio Summer School
… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and … and sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The …
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Robert Bowers
… Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the …
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