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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The … have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are … This work was supported by the International Consortium for Sugarcane …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since … aims to create pipelines, tools and other standardized data resources that the global research community can access and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we seek to …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using … National Synchrotron Light Source II (NSLS-II). Leveraging resources from user facilities funded by the Biological and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written … type of achievement is especially rewarding. Wint is listed as the primary author on this publication and drove the … posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, and together, they embarked on a quest to …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … and minor capsid proteins (MCP and mCP, respectively), ATPase involved in DNA packaging, and PRO, a cysteine protease … an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome … to a variety of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes … 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than … at Lawrence Berkeley National Laboratory, provided sequence resources — including the eelgrass genome assembly that … This study was supported by a PhD scholarship from the China Scholarship …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … understanding of giant viruses. The Science In the last thirty years, in environments all over the world, … This work was conducted by the US Department of Energy Joint Genome …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match characteristics — … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students … mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium … on the plant microbiome. This year, however, there was a new aspect to the project - they also worked with …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network … Laboratory (EMSL) , successful applicants can also access resources at NEON. This includes access to the NEON … call. Q&A from the Webinar: Q(uestion): Can I apply as a postdoc, or do I need a faculty member as PI? A(nswer: …
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