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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the … and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new potential methanogenic, …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … but they are carriers of several viruses (e.g., Lettuce big-vein associated virus LBVaV; genus Varicosavirus ) which … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a … on JGI data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing genome …
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JGI Workshop at SIMB NP Meeting
… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from …
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Learning to Look
… are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … affecting the microbe’s own eukaryote host. As their small genomes can be easily manipulated through genetic … size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an inovirus. But if …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, …
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Pinning Down a Piece of Photosynthesis
… The products of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the air we breathe … initial target was a family of proteins that appeared in plants and algae and contained a similar region —  a domain … carbon cycles. Given that similar protein domains exist in plants and algae, these findings could pave the way for …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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