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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … Todd Anderson currently works to support understanding of plants, microbes and environmental communities that have … multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Nick Everson
… and logistics activities.  He returned to the Joint Genome Institute after serving as the Chief Operating …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is …
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The Power of One, Amplified
… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Workshop at SIMB NP Meeting
… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI at the AGU Fall Meeting
… context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST … of Arizona: “Spatial metabolic profiling in roots reveals plant specific responses to drought at the Biosphere 2 …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a … process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting …
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