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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s … community. She also provides support for user science and projects through implementation of advanced analysis …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… for our 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial communities — … Deputy Director of JGI’s User Programs. “Many of these projects are large in scale and involve multiple …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and from PIs who have …  resources, these researchers will dive into a range of projects spanning the resilience of desert grasslands to the …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), shows methanogenesis is not limited to  Euryarchaeota .  Finding Methane-Making Microbes …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the first time CRISPR-Cas9 had been used to modify a cell’s genome in order to create lysates with altered metabolic …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how …
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Dispatches From JGI Interns
… Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have …
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