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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial … it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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Streamlining Regulon Identification in Bacteria
… regulation is critical to ensuring genes vital for growth and survival across various environments are … While characterizing sigma factors is the most straightforward application of the technology, in principle, … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics … up to 50 polar and 150 nonpolar metabolomics analyses. For the other calls, we allow up to 200 polar and up to 500 … analyses.   Q:  Can a Scientist from India can apply for support? A: Anyone from anywhere around the world can …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … more  here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of Intent are due … 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for this proposal call? A(nswer): We work with people from …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area … statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on the personal … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah … Community Structure and Methane Production in California’s Canal System,” focuses on anthropogenic impacts on … on which she is expanding with her study of microbes in California’s manmade water transport canals. Inspired by Randall …
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Mindfully Moving JGI
Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all the … been  moved to Berkeley , two of the JGI’s sequencing platforms were turned back on. A third sequencing platform was …
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Graduate Students Get Thesis Research Opportunity at the JGI
… to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have … Lab is the home to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in California’s Canal System,” she will work with Susannah Tringe, …
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Webinar: Introducing the BioSANS capability
The BioSANS instrument is at the Center for Structural Molecular Biology (CSMB) at Oak Ridge … instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, EMSL’s Structural Biology Integrated Research Platform lead Hugh O’Neill, from the Center for Structural …
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Training the Next Generation of Talent
Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … the first participants in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship … Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a technique for profiling …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, leaving potential targets for crop engineering untouched. Research recently published … of these enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, …
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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … role of user facilities in accelerating research and tips for submitting successful proposals: Collaborate With a U.S. … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST …
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