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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … the Synthetic Biology Pathway Engineering group. His research focus includes engineering of non-model yeasts for … production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … process these little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Progress Reports: 2002–2020
… Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY12 Progress Report … FY02–FY05 Progress Reports …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that …
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IMA genome-F18
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … more in the leaf litter and soil near the roots. But the deeper down and away from the roots one goes, the more …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for … Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include … and logistics activities.  He returned to the Joint Genome Institute after serving as the Chief Operating … The Deputy of Operations provides oversight and leadership of JGI …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Setsuko Wakao, Meng Wang, and Allison Werner.   A total of 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative user program. The portfolio of research proposals integrates genomics with nanoscale science, …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … close relative, as a biofuel. To this end, a team of researchers led by Jeremy Schmutz of the JGI and the … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online …
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