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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), … count toward the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per …
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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Metabolomics
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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JGI announces first round of 2023 New Investigator awardees
… our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — …
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Leo Baumgart
… is an essential DNA modification in the early-diverging fungus Rhizopus microsporus." Nature Communications 16, no. … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate …
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Picking Up Threads of Cotton Genomics
… Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … it, which exact base or series of bases you have to alter.’ Why should we invest in something that may not be an …
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Mapping the Earth’s Hidden Fungal Kingdom
… about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The fungal kingdom … species lies an even thornier problem: The genomes already sequenced don't adequately capture the vast nature of fungal …
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JGI-USCCN Strain Sequencing Opportunity
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JGI@25: Fueling Investigation into Methane-Making Microbes
… to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … in themselves. For example, a few organisms originally sequenced in the Hungate1000 collection harbor enzymes that … rumen microbes are awesome and this is just another example why.” …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… a DOE Office of Science User Facility, found that the fungus Olpidium is a link in the evolution and transition of … roots with zoospores of Olpidium bornovanus and allowed the fungus to develop within the host root. Upon maturity, the … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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