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Genome sequence of Streptomyces sp. DSM 42143
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … across the species. Earlier pan-genomes for other plants, like the soybean relative Glycine max ( 2014 ) and the grass …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … An invisible boundary The team set out on a Lewis-and-Clark-like expedition to explore, collect and catalog samples, and …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video … to directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … data.   FY05-07 Sequencing Goals and Results Fiscal Year Sequence (GB) Operating Hours Targets Actual* Targets Actual …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s …
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Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  (LBNL and … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … the Desert Research Institute. Metagenomic and single-cell sequence data have provided a means to access novel …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when … on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for a microbial … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 … so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and … Genomics Building, the JGI’s home at Berkeley Lab. Like the mural, the JGI’s accomplishments over 25 years span …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … Brachypodium distachyon is a small annual grass that is well …
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