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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new … Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in a recent article … core gene in nearly half of those same genomes. The team first applied the workflow to a curated reference set of …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… of the tree of life. A senior scientist at Lawrence Berkeley National Laboratory (Berkeley Lab), Woyke currently serves as the interim deputy …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … which remains unknown and uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished genome derived from an uncultured …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute … I hope to gain professional skills, advice skills, wet lab skills and overall connections. Theo Loureaux : I wanted to first discover new methods with tools I wasn’t familiar with …
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A Model System for Perennial Grasses
… responses in P. hallii . The HAL2 and FIL2 genomes are available on the JGI’s plant portal Phytozome .   … contract no. DE-AC02-05CH11231. The UT Brackenridge Field Lab and the Ladybird Johnson Wildflower Center provided …
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JGI@25: Solving the Mystery of the Missing Oil
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … spilling into the Gulf of Mexico, researchers at Lawrence Berkeley National Laboratory (Berkeley Lab) were on the scene collecting samples. Terry …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… by the National Ecological Observatory Network (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale projects at their …
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The More the Merrier: Making the Case for Plant Pan-genomes
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), relied on a model grass system … B. hybridum accessions produced infertile F1 descendants (first offspring of the parents), posing the question if they … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory (Berkeley Lab) describes it, JGI researchers have also … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing …
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Pinning Down a Piece of Photosynthesis
… and high-iron homeostasis,” said Nicolas Grosjean, the first author of this paper. Grosjean is a research scientist … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Structurally, this protein is … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing …
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A Complex Confection Decoded: Sugarcane Reference Genome
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), with assistance from partners at the … operated under Contract No. DE-AC02-05CH11231 with Lawrence Berkeley National Laboratory. The work conducted at CIRAD …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the … of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . …
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