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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of …
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What Happens Underground Influences Global Nutrient Cycles
… EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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The fungus that made itself at home
… habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights … of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, … adapted to thrive on the limited nutrients found in wood inside homes, and in an environment that offers limited …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call 2018, …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human …
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