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Learning to Look
Machine learning approach significantly expands inovirus … answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … in size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces an … emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … multiple predictions to reliably match viruses with their archaea and bacteria hosts. The Impact Within the domains of …
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Tanja Woyke
After studying the mechanism of action of antifungal natural … was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … and a metagenome- assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology 35, 725-731. Mukherjee et al. …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic …
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JGI announces final round of 2022 Functional Genomics awardees
Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help …
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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes ▿
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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