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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … Lab), have taken stock of the current state of microbial genomic biodiversity. Using publicly available genome … still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their …
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Uncovering Novel Genomes from Earth’s Microbiomes
… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … can still reveal a lot about the biology and diversity of uncultured microbes.” Teams of researchers worked on … with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a …
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Tanja Woyke Elected to American Academy of Microbiology
… to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from … Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as the Functional Genomics Department Head for the Environmental Genomics and …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … reconstruction . We were also able to sample extensively among the early diverging terrestrial fungi (i.e., …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi … data had suggested about a 50/50 split between fungal and bacterial enzymes. Yet, they found proteomic data told a different story: fungal enzymes actually outnumbered bacterial enzymes 3-to-1. Additionally, the fungal enzymes …
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Examples: Successful LOIs & Submissions
… submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … CSP Functional Genomics Submission …
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Finding the Fermenters
… Publication …
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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A One-Stop Shop for Analyzing Algal Genomes
… greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … explore the evolutionary and functional relationships among the different algae. Scientists can use PhycoCosm’s …
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JGI Advisory Committees Code of Conduct
… Fagnan, Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs …
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Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems
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