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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art … Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to help advance … of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data Generation …
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The Switchgrass Genome: Tools and Strategies
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … portals and tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as … U.S. Department of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and … (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are … genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to …
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Chromosomal integration of complex DNA constructs using CRAGE and CRAGE-Duet systems
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Natural Prodcast Episode 22: Alison Narayan
… Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … so starting from some of the enzymes that we had the most data on and knew the most about, working with my … I’m so excited about my lab’s robot is that it gives us a tool to help us– DAN UDWARY: You can generate that data. …
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