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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … RNA Polymerase (RdRP), necessary for replicating the RNA genome replication, detecting it has been a challenge. …
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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DOE Metrics
…     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a …
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JGI on the 2021 Highly Cited Researchers List
JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass …
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Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance
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Combinatorial library design for improving isobutanol production in Saccharomyces cerevisiae
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A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation
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