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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … that showcase our collaborations and capabilities to enable great science that will help solve energy and … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these …
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Natural Prodcast Episode 17: Cassandra Quave
… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … and Sciences. She’s an ethnobotanist and the herbarium curator there, with a broad range of experimental work on plants … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Moderate High Temperature is Beneficial or Detrimental Depending on Carbon Availability in the Green Alga Chlamydomonas reinhardtii
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural … Episode Transcript … contact us on Twitter at @JGI or @danudwary , or by email to [email protected] . We’d love to get your feedback! …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The … In  Nature Communications , researchers describe a strategy to recover high value products from human waste. They   … highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale materials …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship … poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions
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Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made … The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific Subtropical Gyre, microbes … by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation grant GBMF …
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