Results

Methane-derived carbon flows into host–virus networks at different trophic levels in soil
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Abiotic stress reorganizes rhizosphere and endosphere network structure of Sorghum bicolor
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Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils
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Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression
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Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria
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Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, … a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the …
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Marine Microbe Contains Multitudes
… twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how … to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes … of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … some fungal species, other fungi will fill in needed functionalities. This work also shows new overlap between … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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