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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of …
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Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life … Genome Insider …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and … di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … external illumination, making them difficult to use inside deep tissues. Additionally, all plants, many bacterial …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of biofuels, biochemicals and other … The DNA Synthesis Program plays a central role in advancing functional genomics, focusing on developing …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … glasses, or a cane, but only Waldo will have all of these features. As described July 22, 2019, in  Nature …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over to the side … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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