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Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
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Genome Analysis Reveals Diversity and Functional Potential of Novel Janthinobacterium Species From Subarctic Soils
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Applying Viral Genomics Expertise to Understanding the Human Virome
… their expertise in developing and managing public viral genomics resources such as analytical tools and data … “ Advanced analytics for uncovering virus dynamics and functional potential ," is among the five focused on tool … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven … in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and Systems Biology …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow …
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A Collaboration to Improve Plant Genome Annotations Across Species
… resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … Atlas and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes … sets, such as sorghum internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data … quality scores representing potential genomes, and nearly 44,000 metagenomes. All of the data are publicly available …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the masters of adaptation,” …
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CTCF-mediated functional chromatin interactome in pluripotent cells
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Elucidating Bacterial Gene Functions in the Plant Microbiome
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Structure, function and diversity of the healthy human microbiome
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