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How To Use Our Systems
… trainees who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Each portal lists a contact, or you can reach out via the form on our website.   …
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Bacterial barcoding facilitates plant microbiome studies.
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome … of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our …
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SPRUCE-ing Up Science
… carbon despite global warming.  At ORNL, Lawrence brings a bioinformatics expertise, a combination of biology and … the inevitable questions about the study’s methods and analysis, Lawrence is spending time on the graphics that … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in … surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … with her JGI mentor, Robert Bowers . She contributed to the analysis of mobile genetic elements across all of the …
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to … and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts comparative …
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MGM Workshop at Fisabio Summer School 2025
… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the … and seminars as well as practical hands-on sessions in bioinformatics and biostatistics Several sessions will be devoted …
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A Model System for Perennial Grasses
… U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into sustainable fuels for cars and jets. By studying a close relative model species like P. hallii , … team conducted several large-scale field experiments and analysis to find relationships between sequence variation …
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