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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … This work was supported by the U.S. Department of Energy, Office of …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence binning … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for …
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Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
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The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization
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Microbial methane production from calcium carbonate at moderately alkaline pH
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Spatially structured bacterial interactions alter algal carbon flow to bacteria
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A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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