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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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Protein structure determination using metagenome sequence data
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Partners
… The JGI leverages its existing partnerships and develops others … has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology …
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Offerings & Capabilities
… capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , … To meet these needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell analyses and …
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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … role of user facilities in accelerating research and tips for submitting successful proposals: Collaborate With a U.S. … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm …
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … Tips for High Molecular Weight DNA extraction: …
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Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant–Microbe Interactions
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GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three … the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental to  a study that looked into …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in … Nobel Laureate Jennifer Doudna of the University of California, Berkeley and Berkeley Lab, who discussed the … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … Lead Dan Rokhsar , Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out …
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