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Global overview and major challenges of host prediction methods for uncultivated phages
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … expression, when used in addition to traditional methods, can offer scientists a more colorful palette of … Force Office of Scientific Research under Award No. FA9550-14-1-0089, the Camille and Henry Dreyfus Foundation, and the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … releasing fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. …
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Disclaimer
Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Accordingly, the U.S. Government retains a …
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A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … encoded in the genome sequence is part of the integrative science mission of the U.S. Department of Energy (DOE) Joint … Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo …
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … her research focused on stable and accurate computational methods for reacting subsurface flows, and evolved into … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan …
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