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… to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish … Summary There are three types of fungal saprotrophs in the forest. White rot can break down the cellulose, … Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was also …

… Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our …

… importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … (Berkeley Lab). The work was enabled in part through JGI’s Community Science Program through a proposal akin to the … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …

… sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …

… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Additional Resources  …

… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … effective in organizing, training and deploying hundreds of community members in their neighborhoods and nearby forests …

… biology and microfluidics at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, University of …

… and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … This is also the type of synergistic and collaborative community spirit that the JGI advocates for and actively … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …

… is represented at conferences year round; find out where our researchers will be presenting next. Learn about …

… But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … has been instrumental in establishing larger-scale research projects in our group. It’s enabled us to accelerate gene, … through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to …

… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store … candidates for genetic engineering. Our hope is that the community at large will follow that up,” Serrano said.  This …

… environmental samples  sequenced by the JGI through the  Community Science Program and was already available on the … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …