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JGI Hosts GPU Hackathon in May
… processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge … and Oak Ridge National Laboratory (ORNL) to make sure our computational workload can leverage future HPC systems – … and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the JGI hackathon, set …
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Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science … poop.  “As an engineer, I think of poop as a biotech resource,” O’Malley said as she opened her talk at the  2022 … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this collaboration, in 2017, they published … Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … and adjusting the environmental conditions to encourage their growth. In this instance, vegetable oil was … ago. The NRAP site is still being monitored and the team plans to continue collecting data to understand the ERD …
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Tracing the Evolution of Shiitake Mushrooms
… mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … Asia. Afterward, Lentinula groups evolved further, to four major groups: a lineage in Australasia and L … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications for developing economies
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A Plant Root Atlas for Tracking Developmental Trajectories
… datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource that could help researchers track cell development and … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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Toward More Efficient Artificial Photosynthesis
… current natural processes and use it as a sustainable resource for making high-value bioproducts. As a step toward … was enabled in part through the Community Science Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome … is open year-round, and reviews submissions twice a year. Proposals submitted by July 30, 2020 will be considered in …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… in oceans or soils.  A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … than they would gain by pursuing nutrients and other resources in the open oceans.  Other surprises in the research …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… seed dispersal in wild populations for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene … group. It’s just a massive amount of sequencing.”  A Resource for Many Applications Kellogg noted that C4 crops have … found it,” Kellogg mused. “[The S. viridis genome] is a resource for many different applications. The JGI group has …
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