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How Maize Makes An Antibiotic Cocktail
… buck. The research team reports that transferring just four genes encoding these enzymes to another plant, such as  … in  Nature Plants that the zealexin pathway has an “hourglass” shape with diverse precursors in, and many … Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  …
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JGI announces second round of 2023 New Investigator awardees
… Felipe Valdez-Nuñez  The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have not led any previously-accepted proposals — through the New Investigator call under our …
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Microbiome Data Science Team
… of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative … NC. et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… how researchers can gain access to the Advanced Photon Source (APS) at Argonne National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters … Science (FICUS) Call Karolina Michalska , Advanced Photon Source at Argonne National Laboratory: “Advanced Photon …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship … Guohong Wu, Plant Comparative Analysis What effect has your summer internship with the JGI had on your plans to pursue a STEM career?
 Doing the JGI internship has …
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Cataloging the Microbes that Manage the Health of River Systems
… be the first publicly available, river-focused microbial resource that provides information at multiple scales from … can successfully partner with DOE user facilities and resources on such large-scale multi-omic data efforts, but also … the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal 10.46936/10.25585/60001289) …
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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … humans shape our health. A total of 16 projects have been approved, divided among the following categories: Catalog …
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Force measurements of a magnetic micro actuator proposed for a microvalve array
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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First Monoploid Reference Sequence of Sugarcane
… now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a … Based in part on these positive results, in 2017, JGI approved a CSP proposal from the international team to complete the …
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