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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than … of 328 “high quality” (based on completeness) diverse new virophage genomes containing all four core genes. These …
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John Vogel
… of transgenic switchgrass lines in an effort to create improved varieties for biomass production. He did his … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … and depletion of soil metabolites by a model grass New Phytologist 222: 1149-1160 …
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Searching for new branches on the tree of life
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia
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10 From JGI on the 2019 Highly Cited Researchers List
… a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … Theobroma cacao, the tree that produces cacao beans. The improved cacao genome is available on the latest version of the JGI plant portal Phytozome, which is overseen by 2017 Highly Cited …
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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A Community Resource for Secondary Metabolite Researchers
… over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … off past experience in developing a secondary metabolites portal within the Integrated Microbial Genomes and … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. … SMC is the most comprehensive BGC database …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference … genome-wide regulation and cataloging them in JGI’s fungal portal MycoCosm. … The work conducted by the US Department …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, … is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently published a Nature …
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